PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g61510
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 263aa    MW: 28429.3 Da    PI: 9.6819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g61510genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024205224323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 C+ Cgk+F  ++ L+ H++++
  CA00g61510 205 CSQCGKPF-KPEKLHAHMKSC 224
                 ********.**********98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDSSKKTPSE IEEESQNIAS ETSTITTDNS PKFQEEEEEK VNNFDNSFSS NSSSSISSFG  60
SMKTKKKIDQ DHHHVIEHGE NNSTDKNSSK NPKFNKSKSY SNGASSIFRN LITCGAVDTN  120
DAGIVPLRKN KTSLSSDKTV SFSSEICKAD KIGGSQRIFG TSWNQQTTNG RKSCDGAFGY  180
SKNKSEFGSR RSVSANYKPI NGPNCSQCGK PFKPEKLHAH MKSCKGMKAL AKGAYSATAA  240
ATEKTSKDAS KVDSLSAKFL TH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755133e-33HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543169.10.0PREDICTED: protein UPSTREAM OF FLC
RefseqXP_016543179.10.0PREDICTED: protein UPSTREAM OF FLC
RefseqXP_016543188.10.0PREDICTED: protein UPSTREAM OF FLC
RefseqXP_016543196.10.0PREDICTED: protein UPSTREAM OF FLC
TrEMBLA0A0V0I2721e-114A0A0V0I272_SOLCH; Uncharacterized protein
STRINGPGSC0003DMT4000798951e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52061315